Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1552Iron binding protein IscA for iron-sulfur cluster assembly; Belongs to the HesB/IscA family. (108 aa)    
Predicted Functional Partners:
sufE
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
 
 0.977
LP43_1553
Cysteine desulfurase.
 
 
 0.976
LP43_1554
Iron-sulfur cluster regulator IscR.
  
  
 0.917
LP43_1238
Cysteine desulfurase.
 
 
 0.908
sufB
Iron-sulfur cluster assembly protein SufB.
  
 
 0.864
sufC
Iron-sulfur cluster assembly ATPase protein SufC.
  
 
 0.852
sufD
Iron-sulfur cluster assembly protein SufD.
  
 
 0.844
LP43_2357
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress; Belongs to the GcvT family.
 
 
 
 0.836
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.771
LP43_1555
Serine acetyltransferase.
     
 0.710
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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