Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1577Two-component system sensor protein. (433 aa)    
Predicted Functional Partners:
LP43_2119
Hypothetical protein.
  
 0.975
LP43_2118
Hypothetical protein.
  
 0.936
LP43_2231
Hypothetical protein.
 
 
0.922
LP43_2026
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
    
 0.894
LP43_0503
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 0.885
LP43_1576
Two-component system regulatory protein.
  
  0.862
LP43_1620
Putative two-component response regulator.
  
  0.851
LP43_2349
Copper-sensing two-component system response regulator CpxR.
  
  0.833
LP43_1579
Hypothetical protein.
 
     0.831
LP43_1580
Hypothetical protein.
 
     0.827
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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