Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_1585Hypothetical protein. (177 aa)    
Predicted Functional Partners:
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
     
  0.885
LP43_0264
5-oxoprolinase.
     
  0.811
LP43_1582
Hypothetical protein.
 
     0.736
LP43_1583
Amine oxidase, flavin-containing.
 
     0.725
LP43_1579
Hypothetical protein.
 
     0.711
LP43_1577
Two-component system sensor protein.
 
     0.646
LP43_1580
Hypothetical protein.
 
     0.641
LP43_1578
Cyclopropane-fatty-acyl-phospholipid synthase-like protein.
 
     0.615
LP43_1584
Fatty acid desaturase/Delta-9 fatty acid desaturase.
 
     0.607
LP43_1581
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.591
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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