STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1619Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)    
Predicted Functional Partners:
LP43_1618
Membrane fusion protein of RND family multidrug efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.982
LP43_1617
RND efflux system, outer membrane lipoprotein, NodT family.
 
 0.949
LP43_1621
Putative two-component sensor.
 
     0.859
LP43_1620
Putative two-component response regulator.
 
     0.808
LP43_0273
Putative Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.725
LP43_1227
Multidrug efflux membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.700
LP43_0097
Putative Co/Zn/Cd efflux system membrane fusion protein.
   
  0.658
LP43_0778
Co/Zn/Cd efflux system membrane fusion protein.
   
  0.658
cmeA
RND efflux system, membrane fusion protein CmeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.658
LP43_0123
Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.632
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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