Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_16684Fe-4S ferredoxin, iron-sulfur binding; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
LP43_2136
Isocitrate dehydrogenase [NADP]/Monomeric isocitrate dehydrogenase [NADP]; Belongs to the monomeric-type IDH family.
  
 
 0.941
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
     
 0.914
LP43_0858
Hypothetical protein.
    
 0.866
LP43_0842
Tungsten-containing formate dehydrogenase beta subunit.
     
 0.861
LP43_1212
Methane monooxygenase component C.
    
 0.851
LP43_0835
Iron-sulfur cluster-binding protein.
    
 0.831
LP43_2245
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
 0.811
LP43_0240
Glutamate synthase [NADPH] subunit beta.
  
 0.790
LP43_2026
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
     
 0.790
LP43_0375
Pyruvate carboxyl transferase subunit B.
   
 
  0.785
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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