Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1690Putative activity regulator of membrane protease YbbK. (146 aa)    
Predicted Functional Partners:
LP43_1691
Putative stomatin/prohibitin-family membrane protease subunit YbbK.
 
 
 0.988
cobS
Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.838
LP43_1571
Putative stomatin/prohibitin-family membrane protease subunit.
  
 
 0.809
LP43_1689
Alpha-ribazole-5'-phosphate phosphatase.
  
    0.804
LP43_1688
Hypothetical protein.
       0.774
LP43_1572
Putative membrane-bound ClpP-class protease.
   
  
 0.546
LP43_1692
Hypothetical protein.
       0.532
hflC
HflC protein; HflC and HflK could regulate a protease.
 
   0.469
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.452
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
 0.451
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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