Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1784Hypothetical protein. (435 aa)    
Predicted Functional Partners:
LP43_1785
Sulfotransferase.
       0.594
LP43_1782
Glycosyl transferase, family 2.
       0.504
LP43_1783
Glycosyltransferase.
       0.504
LP43_1786
Hypothetical protein.
       0.475
LP43_1787
Hypothetical protein.
       0.475
LP43_1788
Polysaccharide biosynthesis related protein.
       0.420
LP43_1789
Hypothetical protein.
       0.420
LP43_1781
UDP-glucose 4-epimerase.
       0.418
LP43_1790
Hypothetical protein.
       0.408
LP43_1791
UDP-N-acetylglucosamine 4,6-dehydratase.
       0.408
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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