STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1823Putative heme iron utilization protein. (147 aa)    
Predicted Functional Partners:
LP43_1822
Hypothetical protein.
       0.773
LP43_1695
Vitamin B12 ABC transporter, B12-binding component BtuF.
  
    0.677
LP43_0867
Ferric iron ABC transporter, iron-binding protein.
   
    0.654
LP43_2346
Putative periplasmic substrate-binding transport protein.
  
    0.639
LP43_1269
High-affinity iron permease.
  
    0.599
LP43_1224
Glutathione S-transferase III-like.
  
     0.555
cspE-2
Cold shock protein CspE.
       0.538
LP43_1392
Cytochrome c, class I.
   
    0.529
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
     
 0.508
LP43_1824
Hypothetical protein.
       0.437
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.