STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1912Hypothetical protein. (77 aa)    
Predicted Functional Partners:
LP43_1238
Cysteine desulfurase.
   
 0.868
LP43_1553
Cysteine desulfurase.
   
 0.868
LP43_1911
Phosphoadenylyl-sulfate reductase [thioredoxin]/Adenylyl-sulfate reductase [thioredoxin]; Reduction of activated sulfate into sulfite.
  
 
  0.828
cysD
Sulfate adenylyltransferase subunit 2.
  
 
  0.811
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
    0.801
LP43_1913
Putative sulfate permease.
  
    0.774
LP43_1185
Hypothetical protein.
  
 
 0.749
mgdC
N-methyl glutamate dehydrogenase/oxidoreductase subunit C; Belongs to the GcvT family.
    
 0.569
LP43_1914
Cys regulon transcriptional activator CysB; Belongs to the LysR transcriptional regulatory family.
       0.542
LP43_0788
NADH dehydrogenase.
  
 
 0.541
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.