Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1915MxaD protein. (188 aa)    
Predicted Functional Partners:
mxaI
Methanol dehydrogenase, small subunit.
 
  
  0.826
mxaL
MxaL protein.
  
  0.818
mxaA
MxaA protein.
 
  
  0.809
mxaJ
MxaJ protein.
  
  
  0.808
mxaK
MxaK protein.
 
  
  0.804
mxaL-2
MxaL protein.
  
  0.800
mxaF
Methanol dehydrogenase, large subunit.
  
  
  0.798
xoxJ
XoxJ protein.
  
  
  0.798
mxaG
Cytochrome c-L precursor (Cytochrome c551I) (Cytochrome c552).
  
  
  0.791
mxaC-2
MxaC protein.
 
  
  0.778
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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