Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1917TonB-dependent receptor. (686 aa)    
Predicted Functional Partners:
LP43_1919
Putative thiamin transporter PnuT.
 
     0.922
LP43_1918
Hypothetical protein.
 
     0.915
LP43_0822
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.803
LP43_1744
Zinc-regulated outer membrane receptor.
  
  
 0.738
LP43_2302
Hypothetical protein.
  
   
 0.660
LP43_0819
MotA/TolQ/ExbB proton channel family protein.
 
  
 0.620
LP43_0823
TPR domain protein, putative component of TonB system.
  
     0.617
LP43_2020
Hypothetical protein.
  
     0.595
LP43_1949
Hypothetical protein.
  
     0.577
tolA
TolA protein.
   
 
 0.543
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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