Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LP43_1960Lipid A core-O-antigen ligase. (571 aa)    
Predicted Functional Partners:
LP43_0975
Putative lipoprotein.
  
     0.736
LP43_1780
Lipid carrier : UDP-N-acetylgalactosaminyltransferase.
 
 
 0.655
LP43_1091
Hypothetical protein.
  
     0.652
LP43_2438
Putative 2-acylglycerophosphoethanolamine acyltransferase/acyl-acyl carrier protein synthetase.
  
     0.599
LP43_1822
Hypothetical protein.
  
     0.591
LP43_0030
ABC transporter, ATP-binding/permease protein.
 
     0.584
LP43_1280
Membrane fusion protein of RND family multidrug efflux pump.
  
     0.584
LP43_0456
TPR repeat containing protein.
 
     0.574
LP43_1971
ABC transporter substrate-binding protein.
  
     0.553
LP43_1848
Hypothetical protein.
  
     0.550
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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