STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1961Type IV pilin PilA; Belongs to the N-Me-Phe pilin family. (147 aa)    
Predicted Functional Partners:
pilE
Type IV pilus biogenesis protein PilE.
 
  
 0.867
pilQ
Type IV pilus biogenesis protein PilQ.
 
   
 0.792
pilM
Type IV pilus biogenesis protein PilM.
 
   
 0.669
pilO
Type IV pilus biogenesis protein PilO.
  
   
 0.591
LP43_0536
Leader peptidase (Prepilin peptidase)/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.569
pilN
Type IV pilus biogenesis protein PilN.
  
   
 0.560
pilC
Type IV fimbrial assembly protein PilC.
 
   
 0.544
LP43_1960
Lipid A core-O-antigen ligase.
       0.492
LP43_1504
Hypothetical protein.
   
 0.446
LP43_1505
Hypothetical protein.
   
 0.446
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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