Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2010Hypothetical protein. (213 aa)    
Predicted Functional Partners:
yrbD
Putative ABC transporter, periplasmic component YrbD.
  
  0.869
LP43_2153
Hypothetical protein.
  
     0.757
LP43_0354
O-Antigen polymerase.
  
     0.737
LP43_1816
Hypothetical protein.
  
     0.728
LP43_0026
Phosphate-specific outer membrane porin OprP/Pyrophosphate-specific outer membrane porin OprO.
  
     0.726
LP43_0165
Hypothetical protein.
  
     0.714
LP43_1508
Hypothetical protein.
  
     0.708
LP43_0572
Hypothetical protein.
  
     0.676
yrbF
Putative ABC transporter, ATP-binding protein YrbF.
  
 
  0.673
LP43_0756
Hypothetical protein.
  
     0.666
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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