Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LP43_2031Type II and III secretion system family protein. (265 aa)    
Predicted Functional Partners:
LP43_2032
Hypothetical protein.
 
     0.852
LP43_2033
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.811
LP43_2030
Oxygen-insensitive NAD(P)H nitroreductase/Dihydropteridine reductase.
       0.753
LP43_1816
Hypothetical protein.
  
     0.737
flhB
Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
   
 
 0.685
pilW
Type IV fimbrial biogenesis protein PilW.
 
     0.599
LP43_0559
InaA protein.
  
     0.586
pilY
Type IV fimbrial biogenesis protein PilY1.
 
     0.579
LP43_1154
SAM-dependent methyltransferase.
  
     0.568
pilQ
Type IV pilus biogenesis protein PilQ.
 
  
 0.553
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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