Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_2087Quinone oxidoreductase. (329 aa)    
Predicted Functional Partners:
LP43_2088
YqhD-like oxidoreductase.
  
    0.742
LP43_2086
NADH:flavin oxidoreductase, Old Yellow Enzyme family.
  
  
 0.706
LP43_1212
Methane monooxygenase component C.
     
 0.697
LP43_0375
Pyruvate carboxyl transferase subunit B.
    
 0.687
LP43_2064
Oxaloacetate decarboxylase alpha chain.
    
 0.687
LP43_1717
Hypothetical protein.
     
  0.675
LP43_2339
Long-chain-fatty-acid--CoA ligase.
   
 0.655
LP43_2438
Putative 2-acylglycerophosphoethanolamine acyltransferase/acyl-acyl carrier protein synthetase.
   
 0.655
LP43_0559
InaA protein.
    
  0.648
LP43_2085
L-sorbosone dehydrogenase.
  
    0.643
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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