Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2121Hypothetical protein. (68 aa)    
Predicted Functional Partners:
LP43_2019
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.721
LP43_2167
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.721
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.721
LP43_2122
Hypothetical protein.
       0.615
LP43_0759
Hypothetical protein.
     
 0.509
LP43_2120
Hypothetical protein.
       0.484
LP43_2119
Hypothetical protein.
       0.421
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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