Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2144Hypothetical protein. (55 aa)    
Predicted Functional Partners:
LP43_2143
Hypothetical protein.
  
    0.835
LP43_0350
Hypothetical protein.
  
    0.674
LP43_1882
21 kDa hemolysin precursor.
  
    0.669
LP43_1839
Putative lipoprotein.
   
    0.593
LP43_2145
cAMP-binding protein.
       0.547
LP43_2142
Hypothetical protein.
  
    0.530
LP43_2146
Hypothetical protein.
  
    0.503
LP43_1842
Dodecin.
   
  
 0.460
LP43_2319
Hypothetical protein.
 
    0.419
LP43_1817
Hypothetical protein.
  
    0.416
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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