STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2168Putative sterol desaturase. (267 aa)    
Predicted Functional Partners:
LP43_0474
Phytoene synthase.
  
 0.919
LP43_1927
Phytoene synthase.
  
 0.919
LP43_0977
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
   
 0.766
LP43_0978
2-octaprenyl-6-methoxyphenol hydroxylase.
   
 0.766
LP43_1208
Alkane-1 monooxygenase.
  
 
 0.740
LP43_0858
Hypothetical protein.
  
 
 0.636
LP43_1401
Flavodoxin reductase (ferredoxin-NADPH reductases) family 1/Vanillate O-demethylase oxidoreductase.
   
 
 0.613
dld
D-Lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
   
 
 0.603
LP43_1781
UDP-glucose 4-epimerase.
   
 0.587
LP43_1792
UDP-glucose 4-epimerase.
   
 0.587
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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