Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_2195Glucose-1-phosphate thymidylyltransferase. (227 aa)    
Predicted Functional Partners:
LP43_2196
Phosphotransferase.
 
 
 0.994
LP43_1718
Translation initiation factor 2B alpha/beta/delta-type subunit; Belongs to the eIF-2B alpha/beta/delta subunits family.
   
 0.958
LP43_1389
Sucrose phosphate synthase.
  
 0.897
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.839
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
 0.810
LP43_1146
UTP--glucose-1-phosphate uridylyltransferase.
 
  
 0.793
glmU
N-acetylglucosamine-1-phosphate uridyltransferase/Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
   
 0.726
LP43_1795
UDP-glucose dehydrogenase.
  
 
 0.726
LP43_0591
Phosphomannomutase/Phosphoglucomutase.
 
 
 0.718
LP43_1212
Methane monooxygenase component C.
  
 
 0.711
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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