STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2242Hypothetical protein. (279 aa)    
Predicted Functional Partners:
LP43_2241
Hypothetical protein.
 
     0.875
LP43_2243
Hypothetical protein.
 
     0.854
LP43_2240
Transcriptional regulator, ArsR family.
       0.787
LP43_2239
ADA regulatory protein/Methylated-DNA--protein-cysteine methyltransferase.
       0.550
LP43_0194
HtrA protease/chaperone protein/Serine protease (Protease DO); Belongs to the peptidase S1C family.
    
 
 0.401
LP43_2350
Serine protease precursor MucD/AlgY associated with sigma factor RpoE; Belongs to the peptidase S1C family.
    
 
 0.401
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.