Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2243Hypothetical protein. (231 aa)    
Predicted Functional Partners:
LP43_2241
Hypothetical protein.
  
  0.859
LP43_2242
Hypothetical protein.
 
   
 0.856
LP43_2240
Transcriptional regulator, ArsR family.
     
 0.792
LP43_0172
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
 
  0.534
LP43_2239
ADA regulatory protein/Methylated-DNA--protein-cysteine methyltransferase.
       0.518
LP43_2276
Hypothetical protein.
  
  
 
0.490
LP43_0327
Rhodanese-like domain protein.
 
  0.469
LP43_0279
Transcriptional regulatory protein.
    
   0.460
LP43_1044
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor.
 
 
 0.427
LP43_1699
Hypothetical protein.
   
    0.411
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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