Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LP43_0279 | LP43_2248 | Transcriptional regulatory protein. | Hydroxyacylglutathione hydrolase. | 0.517 |
LP43_0327 | LP43_0809 | Rhodanese-like domain protein. | Rhodanese-related sulfurtransferase. | 0.753 |
LP43_0327 | LP43_1212 | Rhodanese-like domain protein. | Methane monooxygenase component C. | 0.690 |
LP43_0327 | LP43_2248 | Rhodanese-like domain protein. | Hydroxyacylglutathione hydrolase. | 0.789 |
LP43_0809 | LP43_0327 | Rhodanese-related sulfurtransferase. | Rhodanese-like domain protein. | 0.753 |
LP43_0809 | LP43_1212 | Rhodanese-related sulfurtransferase. | Methane monooxygenase component C. | 0.690 |
LP43_0809 | LP43_2248 | Rhodanese-related sulfurtransferase. | Hydroxyacylglutathione hydrolase. | 0.630 |
LP43_1212 | LP43_0327 | Methane monooxygenase component C. | Rhodanese-like domain protein. | 0.690 |
LP43_1212 | LP43_0809 | Methane monooxygenase component C. | Rhodanese-related sulfurtransferase. | 0.690 |
LP43_1212 | LP43_2241 | Methane monooxygenase component C. | Hypothetical protein. | 0.690 |
LP43_1212 | LP43_2247 | Methane monooxygenase component C. | Oxidoreductase (flavoprotein). | 0.834 |
LP43_1212 | LP43_2248 | Methane monooxygenase component C. | Hydroxyacylglutathione hydrolase. | 0.616 |
LP43_1212 | LP43_2250 | Methane monooxygenase component C. | Cytochrome c551 peroxidase. | 0.438 |
LP43_2241 | LP43_1212 | Hypothetical protein. | Methane monooxygenase component C. | 0.690 |
LP43_2241 | LP43_2248 | Hypothetical protein. | Hydroxyacylglutathione hydrolase. | 0.542 |
LP43_2246 | LP43_2247 | Sulfate permease. | Oxidoreductase (flavoprotein). | 0.784 |
LP43_2246 | LP43_2248 | Sulfate permease. | Hydroxyacylglutathione hydrolase. | 0.571 |
LP43_2246 | LP43_2249 | Sulfate permease. | Cytochrome c-type biogenesis protein ResA. | 0.422 |
LP43_2246 | LP43_2250 | Sulfate permease. | Cytochrome c551 peroxidase. | 0.406 |
LP43_2247 | LP43_1212 | Oxidoreductase (flavoprotein). | Methane monooxygenase component C. | 0.834 |
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