Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_2292Nitrite-sensitive transcriptional repressor NsrR. (129 aa)    
Predicted Functional Partners:
LP43_2107
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase); Belongs to the globin family.
 
   
 0.673
LP43_1238
Cysteine desulfurase.
  
 
 0.633
LP43_1553
Cysteine desulfurase.
  
 
 0.633
LP43_2293
Serine/threonine protein kinase.
       0.568
LP43_2294
Nitrate/nitrite transporter.
     
 0.553
LP43_0858
Hypothetical protein.
     
 0.455
LP43_1197
NnrS protein involved in response to NO.
 
  
 0.455
LP43_1554
Iron-sulfur cluster regulator IscR.
  
   
 0.417
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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