Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2316Hypothetical protein. (423 aa)    
Predicted Functional Partners:
LP43_2315
High-affinity choline uptake protein BetT; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.805
LP43_0857
Hypothetical protein.
  
     0.707
LP43_2375
Hypothetical protein.
  
     0.539
LP43_2010
Hypothetical protein.
  
     0.513
LP43_0354
O-Antigen polymerase.
  
     0.509
LP43_0756
Hypothetical protein.
  
     0.484
LP43_2153
Hypothetical protein.
  
     0.482
LP43_0125
Hypothetical protein.
  
     0.472
LP43_0932
Molecular chaperone.
  
     0.456
LP43_0026
Phosphate-specific outer membrane porin OprP/Pyrophosphate-specific outer membrane porin OprO.
  
     0.430
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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