LP43_2322 protein (Methylophaga thiooxydans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LP43_2322

Sulfate permease. (510 aa)

Predicted Functional Partners:

LP43_2275

0.934

LP43_0241

0.885

acpP

0.838

LP43_0264

0.723

LP43_0523

0.691

LP43_0281

0.623

LP43_0780

0.623

LP43_2341

0.608

LP43_1008

0.587

LP43_1108

0.429

Your Current Organism:

Methylophaga thiooxydans

NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LP43_0241	LP43_0264	LP43_0241	LP43_0264	Glutamate synthase [NADPH] subunit alpha.	5-oxoprolinase.	0.895
LP43_0241	LP43_0523	LP43_0241	LP43_0523	Glutamate synthase [NADPH] subunit alpha.	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.585
LP43_0241	LP43_1008	LP43_0241	LP43_1008	Glutamate synthase [NADPH] subunit alpha.	NADH-ubiquinone oxidoreductase chain M.	0.590
LP43_0241	LP43_1108	LP43_0241	LP43_1108	Glutamate synthase [NADPH] subunit alpha.	Na(+) H(+) antiporter subunit A/Na(+) H(+) antiporter subunit B.	0.635
LP43_0241	LP43_2322	LP43_0241	LP43_2322	Glutamate synthase [NADPH] subunit alpha.	Sulfate permease.	0.885
LP43_0241	LP43_2341	LP43_0241	LP43_2341	Glutamate synthase [NADPH] subunit alpha.	Hypothetical protein.	0.899
LP43_0241	acpP	LP43_0241	LP43_2218	Glutamate synthase [NADPH] subunit alpha.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.899
LP43_0264	LP43_0241	LP43_0264	LP43_0241	5-oxoprolinase.	Glutamate synthase [NADPH] subunit alpha.	0.895
LP43_0264	LP43_2322	LP43_0264	LP43_2322	5-oxoprolinase.	Sulfate permease.	0.723
LP43_0281	LP43_0523	LP43_0281	LP43_0523	Hypothetical protein.	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.708
LP43_0281	LP43_2322	LP43_0281	LP43_2322	Hypothetical protein.	Sulfate permease.	0.623
LP43_0523	LP43_0241	LP43_0523	LP43_0241	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Glutamate synthase [NADPH] subunit alpha.	0.585
LP43_0523	LP43_0281	LP43_0523	LP43_0281	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.708
LP43_0523	LP43_0780	LP43_0523	LP43_0780	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.708
LP43_0523	LP43_1008	LP43_0523	LP43_1008	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase chain M.	0.992
LP43_0523	LP43_1108	LP43_0523	LP43_1108	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Na(+) H(+) antiporter subunit A/Na(+) H(+) antiporter subunit B.	0.787
LP43_0523	LP43_2322	LP43_0523	LP43_2322	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Sulfate permease.	0.691
LP43_0523	LP43_2341	LP43_0523	LP43_2341	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.741
LP43_0523	acpP	LP43_0523	LP43_2218	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.743
LP43_0780	LP43_0523	LP43_0780	LP43_0523	Hypothetical protein.	Ubiquinol--cytochrome C reductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.708

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About