Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_2344Ferrichrome transport ATP-binding protein FhuC; (TC 3.A.1.14.3). (264 aa)    
Predicted Functional Partners:
LP43_2345
Iron(III) dicitrate transport system permease protein FecD; (TC 3.A.1.14.1); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.996
LP43_2346
Putative periplasmic substrate-binding transport protein.
 
 0.991
LP43_1697
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.984
LP43_1695
Vitamin B12 ABC transporter, B12-binding component BtuF.
 
 0.962
LP43_2343
Hypothetical protein.
 
     0.858
LP43_2347
Hypothetical protein.
 
  
 0.788
LP43_2348
Signal transduction histidine kinase.
       0.446
LP43_2349
Copper-sensing two-component system response regulator CpxR.
       0.446
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
 
  0.413
LP43_2514
Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
    
  0.409
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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