Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_2347Hypothetical protein. (653 aa)    
Predicted Functional Partners:
LP43_2346
Putative periplasmic substrate-binding transport protein.
 
  
 0.811
LP43_2345
Iron(III) dicitrate transport system permease protein FecD; (TC 3.A.1.14.1); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.806
LP43_2343
Hypothetical protein.
 
     0.788
LP43_2344
Ferrichrome transport ATP-binding protein FhuC; (TC 3.A.1.14.3).
 
  
 0.788
LP43_2348
Signal transduction histidine kinase.
 
     0.751
LP43_1626
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
  0.717
LP43_0822
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
  0.711
LP43_0596
Hypothetical protein.
    
 
 0.703
LP43_2044
Hypothetical protein.
    
 
 0.703
tolA
TolA protein.
  
  0.673
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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