STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2394Hypothetical protein. (162 aa)    
Predicted Functional Partners:
LP43_0354
O-Antigen polymerase.
  
     0.518
rpsI
SSU ribosomal protein S9p (S16e); Belongs to the universal ribosomal protein uS9 family.
       0.494
rplM
LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.479
LP43_2010
Hypothetical protein.
  
     0.478
LP43_2153
Hypothetical protein.
  
     0.470
LP43_0752
Hypothetical protein.
  
     0.464
LP43_1816
Hypothetical protein.
  
     0.426
LP43_2110
Hypothetical protein.
  
     0.426
LP43_1852
Zn-ribbon-containing protein.
  
     0.419
LP43_0517
Hypothetical protein.
  
     0.406
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.