STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxD-2Sulfite dehydrogenase cytochrome subunit SoxD. (176 aa)    
Predicted Functional Partners:
LP43_1870
Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.995
LP43_2404
Sulfur oxidation molybdopterin C protein.
 
 
 0.989
soxC
Sulfur oxidation molybdopterin C protein SoxC.
 
 
 0.956
LP43_0033
2-Keto-D-gluconate dehydrogenase.
 
 
 
 0.893
soxZ
Sulfur oxidation protein SoxZ.
 
  
 0.845
soxY
Sulfur oxidation protein SoxY.
 
  
 0.836
LP43_2403
GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.752
mxaG
Cytochrome c-L precursor (Cytochrome c551I) (Cytochrome c552).
   
 0.744
LP43_0747
Cytochrome c-555 precursor (Cytochrome c555).
   
 0.744
LP43_1304
Hypothetical protein.
   
 0.744
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.