Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LP43_2430 | hisC-2 | LP43_2430 | LP43_2420 | MxaD protein. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.403 |
LP43_2430 | hisD | LP43_2430 | LP43_2421 | MxaD protein. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.403 |
LP43_2430 | hisG | LP43_2430 | LP43_2422 | MxaD protein. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.403 |
LP43_2430 | murA | LP43_2430 | LP43_2423 | MxaD protein. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.403 |
LP43_2430 | yrbA | LP43_2430 | LP43_2424 | MxaD protein. | YrbA protein; Belongs to the BolA/IbaG family. | 0.433 |
LP43_2430 | yrbB | LP43_2430 | LP43_2425 | MxaD protein. | Protein YrbB. | 0.470 |
LP43_2430 | yrbC | LP43_2430 | LP43_2426 | MxaD protein. | Putative ABC transporter, auxiliary component YrbC. | 0.470 |
LP43_2430 | yrbD | LP43_2430 | LP43_2427 | MxaD protein. | Putative ABC transporter, periplasmic component YrbD. | 0.470 |
LP43_2430 | yrbE | LP43_2430 | LP43_2428 | MxaD protein. | Putative ABC transporter, permease component YrbE. | 0.470 |
LP43_2430 | yrbF | LP43_2430 | LP43_2429 | MxaD protein. | Putative ABC transporter, ATP-binding protein YrbF. | 0.470 |
hisC-2 | LP43_2430 | LP43_2420 | LP43_2430 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | MxaD protein. | 0.403 |
hisC-2 | hisD | LP43_2420 | LP43_2421 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.997 |
hisC-2 | hisG | LP43_2420 | LP43_2422 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.970 |
hisC-2 | murA | LP43_2420 | LP43_2423 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.787 |
hisC-2 | yrbA | LP43_2420 | LP43_2424 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | YrbA protein; Belongs to the BolA/IbaG family. | 0.728 |
hisC-2 | yrbB | LP43_2420 | LP43_2425 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Protein YrbB. | 0.667 |
hisC-2 | yrbC | LP43_2420 | LP43_2426 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Putative ABC transporter, auxiliary component YrbC. | 0.670 |
hisC-2 | yrbD | LP43_2420 | LP43_2427 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Putative ABC transporter, periplasmic component YrbD. | 0.668 |
hisC-2 | yrbE | LP43_2420 | LP43_2428 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Putative ABC transporter, permease component YrbE. | 0.666 |
hisC-2 | yrbF | LP43_2420 | LP43_2429 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Putative ABC transporter, ATP-binding protein YrbF. | 0.666 |
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