Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_2437Universal stress protein. (148 aa)    
Predicted Functional Partners:
LP43_2438
Putative 2-acylglycerophosphoethanolamine acyltransferase/acyl-acyl carrier protein synthetase.
       0.774
LP43_2436
Thioredoxin reductase.
  
  
 0.630
LP43_2439
GGDEF domain protein.
       0.590
LP43_2239
ADA regulatory protein/Methylated-DNA--protein-cysteine methyltransferase.
   
    0.470
LP43_2482
Ribosome hibernation protein YhbH.
  
  
 0.464
ftsK
Cell division protein FtsK.
   
   0.445
LP43_0207
Hypothetical protein.
   
    0.431
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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