Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_2456RND-type multidrug efflux pump, membrane permease. (368 aa)    
Predicted Functional Partners:
LP43_2455
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.871
LP43_1825
Hypothetical protein.
  
     0.757
LP43_2377
Hypothetical protein.
  
     0.735
LP43_1493
Hypothetical protein.
  
     0.728
LP43_1519
Hypothetical protein.
  
     0.701
LP43_1278
Heavy metal RND efflux outer membrane protein, CzcC family.
  
  0.679
LP43_0509
Hypothetical protein.
  
     0.644
LP43_0516
Putative lipoprotein.
  
     0.639
LP43_1126
Oxidoreductase.
  
     0.632
LP43_0287
Formylmethanofuran hydrolase subunit B.
  
     0.623
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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