Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_2501Hypothetical protein. (241 aa)    
Predicted Functional Partners:
LP43_0595
Hypothetical protein.
 
     0.554
lon
ATP-dependent protease La Type I; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
     
  0.550
LP43_2502
Hypothetical protein.
       0.530
LP43_0596
Hypothetical protein.
  
     0.523
LP43_1389
Sucrose phosphate synthase.
   
 
 0.499
LP43_0356
Glycosyl transferase, group 1.
    
   0.460
LP43_0357
Glycosyltransferase.
    
   0.460
LP43_0554
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG.
    
   0.460
LP43_0555
Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
    
   0.460
LP43_0731
Glycosyltransferase.
    
   0.460
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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