Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0019PFAM: glycosyl transferase, group 1. (342 aa)    
Predicted Functional Partners:
Swit_0018
PFAM: metallophosphoesterase.
   
 0.951
Swit_0020
PFAM: protein of unknown function DUF1013.
       0.713
Swit_0017
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.
     
 0.704
Swit_2371
PFAM: sugar transferase.
 
  
 0.491
Swit_4001
PFAM: glycosyl transferase, family 2.
  
  
 0.491
Swit_1930
Conserved hypothetical protein.
 
     0.473
Swit_1814
PFAM: glycosyl transferase, group 1.
  
     0.461
Swit_2652
PFAM: polysaccharide biosynthesis protein.
 
  
 0.459
Swit_0792
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.447
Swit_2402
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12.
 
   
 0.439
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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