STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0076Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH. (115 aa)    
Predicted Functional Partners:
Swit_0077
PFAM: nitroreductase.
  
    0.810
Swit_0078
TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region.
 
     0.712
Swit_2673
PFAM: protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
  
    0.574
Swit_0079
PFAM: amidohydrolase.
 
     0.562
Swit_0075
Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.508
Swit_0080
PFAM: Amidohydrolase 3.
       0.497
Swit_1926
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.436
Swit_3706
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.436
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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