Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_0077PFAM: nitroreductase. (196 aa)    
Predicted Functional Partners:
Swit_0076
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH.
  
    0.810
Swit_0078
TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region.
  
  
 0.721
Swit_0079
PFAM: amidohydrolase.
       0.558
Swit_0080
PFAM: Amidohydrolase 3.
       0.558
Swit_4581
PFAM: ABC-2 type transporter.
  
  
 0.478
Swit_0104
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein.
 
  
 0.468
Swit_3707
PFAM: ABC-2 type transporter.
  
  
 0.462
Swit_3708
PFAM: ABC-2 type transporter.
  
  
 0.462
Swit_2866
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.455
Swit_0075
Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.437
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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