STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0078TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region. (603 aa)    
Predicted Functional Partners:
Swit_0079
PFAM: amidohydrolase.
  
    0.854
Swit_0080
PFAM: Amidohydrolase 3.
  
    0.854
Swit_0077
PFAM: nitroreductase.
  
  
 0.746
Swit_0076
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH.
 
     0.703
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.565
Swit_0029
PFAM: peptidase M28.
 
   0.466
Swit_1824
PFAM: peptidase M28.
 
   0.460
Swit_0514
Endothelin-converting enzyme 1; PFAM: peptidase M13, neprilysin; peptidase M13.
 
  
 0.450
Swit_2578
PFAM: peptidase M20; peptidase M28.
 
   0.449
Swit_2567
PFAM: amino acid permease-associated region.
 
 
 0.445
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.