Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0111PFAM: protein of unknown function DUF1285. (191 aa)    
Predicted Functional Partners:
Swit_0109
PFAM: Polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.870
Swit_0110
PFAM: NUDIX hydrolase.
       0.870
Swit_0112
PFAM: GCN5-related N-acetyltransferase.
       0.853
Swit_4052
PFAM: uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.608
Swit_0113
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.
       0.539
Swit_0114
PFAM: short-chain dehydrogenase/reductase SDR; KR.
       0.517
Swit_0115
PFAM: dihydroneopterin aldolase.
       0.451
Swit_4100
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
 
     0.424
Swit_2638
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.420
Swit_2926
PFAM: isocitrate lyase and phosphorylmutase.
  
     0.415
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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