Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0129Hypothetical protein. (201 aa)    
Predicted Functional Partners:
Swit_0130
PFAM: protein of unknown function DUF1130.
 
     0.638
Swit_0071
Hypothetical protein.
 
    0.527
Swit_0131
Hypothetical protein.
       0.524
Swit_2946
Topoisomerase IB-like protein.
 
    0.515
Swit_3982
TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; DNA polymerase LigD, ligase region; PFAM: DNA primase, small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
 
    0.498
Swit_4794
Uncharacterized protein.
 
     0.485
Swit_0878
PFAM: protein of unknown function DUF1452.
 
    0.483
Swit_3662
Hypothetical protein.
  
     0.475
Swit_2157
PFAM: protein of unknown function DUF72.
 
    0.464
Swit_1804
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.459
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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