STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0138PFAM: FAD linked oxidase domain protein. (506 aa)    
Predicted Functional Partners:
Swit_0137
PFAM: SapC family protein.
       0.773
Swit_0139
Hypothetical protein.
       0.757
Swit_0140
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; Belongs to the DEAD box helicase family.
   
 
 0.734
Swit_3196
PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like.
 
 
 0.617
Swit_3195
PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like.
 
 
 0.605
Swit_1643
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.506
Swit_4230
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.506
Swit_4248
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.506
Swit_4251
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.506
Swit_4638
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.506
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.