Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_0142PFAM: phospholipase D/Transphosphatidylase. (525 aa)    
Predicted Functional Partners:
Swit_1916
PFAM: Endonuclease/exonuclease/phosphatase.
 
  
 0.773
Swit_0141
PFAM: peptidase M20; peptidase dimerisation domain protein.
     
 0.626
Swit_3010
PFAM: phospholipid/glycerol acyltransferase.
 
 0.563
Swit_0143
PFAM: polysaccharide biosynthesis protein.
     
 0.553
Swit_0073
Response regulator receiver protein.
 
   
 0.547
Swit_2821
PFAM: Ankyrin.
  
 0.541
Swit_3098
PFAM: Ankyrin.
  
 0.541
Swit_4793
PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472.
  
  
 0.527
Swit_3925
PFAM: response regulator receiver.
 
  
 0.517
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
 
 0.511
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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