STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0144Hypothetical protein. (223 aa)    
Predicted Functional Partners:
Swit_4822
Hypothetical protein.
  
     0.734
Swit_0145
PFAM: Glutathione S-transferase, N-terminal domain.
     
 0.681
Swit_3309
PFAM: alpha/beta hydrolase fold.
  
     0.616
Swit_4065
PFAM: peptidase C1A, papain.
  
     0.616
Swit_2757
Hypothetical protein.
  
     0.614
Swit_3311
PFAM: alpha/beta hydrolase fold.
  
     0.598
Swit_0143
PFAM: polysaccharide biosynthesis protein.
       0.573
Swit_3191
TIGRFAM: filamentous haemagglutinin family outer membrane protein.
  
     0.570
Swit_0146
PFAM: Helix-turn-helix, type 11 domain protein.
       0.483
Swit_2790
PFAM: heat shock protein DnaJ domain protein.
  
     0.481
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.