STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0149PFAM: conserved hypothetical protein 341. (531 aa)    
Predicted Functional Partners:
Swit_0148
Response regulator receiver and SARP domain protein; PFAM: response regulator receiver.
       0.774
Swit_0150
Hypothetical protein.
       0.773
Swit_0147
Hypothetical protein.
       0.568
Swit_0151
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
    0.546
Swit_3939
PFAM: Sporulation domain protein.
 
    0.505
Swit_4479
Hypothetical protein.
 
     0.502
Swit_0604
PFAM: Sporulation domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein.
 
    0.468
Swit_2398
Hypothetical protein.
  
     0.451
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
     0.411
Swit_0788
Beta-lactamase; PFAM: penicillin-binding protein, transpeptidase; beta-lactamase.
 
    0.406
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.