Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0153Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (205 aa)    
Predicted Functional Partners:
Swit_0152
PFAM: Alcohol dehydrogenase, zinc-binding domain protein.
       0.552
Swit_2305
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.519
Swit_0156
Transcriptional regulator, XRE family.
 
 
   0.515
Swit_3423
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.465
Swit_1535
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.455
Swit_0154
PFAM: phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.450
Swit_0155
PFAM: protein of unknown function DUF1044.
 
     0.439
Swit_4132
PFAM: FAD dependent oxidoreductase.
 
   
 0.429
Swit_0892
Flavoprotein involved in K+ transport-like protein.
 
   
 0.426
Swit_3640
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.422
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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