STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0156Transcriptional regulator, XRE family. (110 aa)    
Predicted Functional Partners:
Swit_0155
PFAM: protein of unknown function DUF1044.
 
  
 0.958
Swit_0154
PFAM: phage integrase family protein; Belongs to the 'phage' integrase family.
       0.613
Swit_0153
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
 
 
 0.523
Swit_2184
Putative plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family.
 
   
 0.478
Swit_2631
PFAM: PilT protein domain protein.
 
     0.457
Swit_2425
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein.
 
   
 0.448
Swit_2183
PFAM: plasmid maintenance system killer.
 
   
 0.436
Swit_2424
PFAM: plasmid maintenance system killer.
 
   
 0.414
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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