STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0160Hypothetical protein. (197 aa)    
Predicted Functional Partners:
Swit_0161
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
       0.558
Swit_0162
PFAM: Conjugal transfer protein TrbC.
       0.558
Swit_0163
Type IV secretory pathway TrbD component-like protein.
       0.558
Swit_0164
SMART: AAA ATPase.
       0.558
Swit_0165
TIGRFAM: P-type conjugative transfer protein TrbJ.
       0.558
Swit_0166
Hypothetical protein.
       0.558
Swit_0167
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
       0.558
Swit_0168
PFAM: Conjugal transfer protein.
       0.558
Swit_0169
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
       0.558
Swit_0170
PFAM: conjugation TrbI family protein.
       0.558
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.