Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0177Type IV secretory pathway VirD4 components-like protein. (578 aa)    
Predicted Functional Partners:
Swit_0178
TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein.
 
   
 0.911
Swit_0179
Hypothetical protein.
     
 0.532
Swit_0180
PFAM: Conjugal transfer TraD family protein.
     
 0.520
Swit_0170
PFAM: conjugation TrbI family protein.
 
 
 
 0.473
Swit_3700
PFAM: conjugation TrbI family protein.
 
 
 
 0.466
Swit_0175
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein.
 
     0.433
Swit_0176
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.423
Swit_1303
PFAM: thioesterase superfamily protein.
  
     0.417
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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