Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0188PFAM: ROSMUCR transcriptional regulator. (162 aa)    
Predicted Functional Partners:
Swit_0189
Hypothetical protein.
       0.668
Swit_2402
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12.
  
   
 0.638
Swit_2716
PFAM: protein of unknown function DUF1321.
  
     0.589
Swit_3011
PFAM: protein of unknown function DUF218.
  
     0.552
rpsU
PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.528
Swit_1095
Hypothetical protein.
  
     0.461
Swit_2850
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.
  
     0.443
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
    0.437
Swit_1930
Conserved hypothetical protein.
 
     0.433
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.428
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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