Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0198PFAM: protein of unknown function DUF1156. (933 aa)    
Predicted Functional Partners:
Swit_0197
Hypothetical protein.
 
     0.950
Swit_0199
ATPase (AAA+ superfamily)-like protein.
 
     0.948
Swit_0196
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like.
 
   
 0.935
Swit_0195
Hypothetical protein.
 
     0.903
Swit_0200
Hypothetical protein.
       0.571
Swit_0201
Hypothetical protein.
       0.552
Swit_0194
Hypothetical protein.
 
     0.536
Swit_3471
Hypothetical protein.
  
     0.467
Swit_3472
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955.
 
     0.422
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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